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microarray-based mrna-profiling data  (Thermo Fisher)


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    Structured Review

    Thermo Fisher microarray-based mrna-profiling data
    Microarray Based Mrna Profiling Data, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray-based+mrna/pmc05664542-655-10-8
    Average 90 stars, based on 1 article reviews
    microarray-based mrna-profiling data - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    other:

    Article Title: Prolactin Receptor Signaling Regulates a Pregnancy-Specific Transcriptional Program in Mouse Islets
    Article Snippet: Microarray analysis Microarray-based mRNA quantification was performed using the Affymetrix GeneChip mouse 2.0 array (Thermo Fisher, Waltham, MA).

    Article Title: Prolactin Receptor Signaling Regulates a Pregnancy-Specific Transcriptional Program in Mouse Islets
    Article Snippet: Microarray-based mRNA quantification was performed using the Affymetrix GeneChip mouse 2.0 array (Thermo Fisher, Waltham, MA).

    Article Title: Differentially Expressed Genes and Their Clinical Significance in Ischaemic Stroke: An In-Silico Study
    Article Snippet: The mRNA microarray expression dataset GSE22255, which is based on the Affymetrix Human Genome U133 Plus 2.0 Array (Affymetrix, Inc., Santa Clara, CA, USA), was retrieved from the Gene Expression Omnibus (GEO).

    Article Title: Effect of Salinomycin on Expression Pattern of Genes Associated with Apoptosis in Endometrial Cancer Cell Line
    Article Snippet: Molecular analysis included determining the changes in expression of genes connected with the apoptosis process based on the microarray technique mRNA HG-U 133A_2 (Affymetrix, Santa Clara, CA), according to the manufacturer’s recommendation.

    Expressing:

    Article Title: STATegra: Multi-omics data integration - A conceptual scheme and a bioinformatics pipeline
    Article Snippet: .. three data types were downloaded: array-based expression (mRNA) – Affymetrix Human Genome HT U133A, array-based expression (miRNA) – Agilent Microarray, and array-based DNA Methylation (DNAm) - Illumina Human Methylation 450K. ..

    Article Title: Clinical and genomic assessment of PD-L1 SP142 expression in triple-negative breast cancer
    Article Snippet: .. To begin to explore the biology and clinical associations of PD-L1 protein expression in TNBC, we collected a set of 149 tumors from which we created TMAs and performed DNA microarray-based gene expression profiling using Affymetrix microarrays. ..

    Microarray:

    Article Title: STATegra: Multi-omics data integration - A conceptual scheme and a bioinformatics pipeline
    Article Snippet: .. three data types were downloaded: array-based expression (mRNA) – Affymetrix Human Genome HT U133A, array-based expression (miRNA) – Agilent Microarray, and array-based DNA Methylation (DNAm) - Illumina Human Methylation 450K. ..

    Article Title: Gene therapy-emulating small molecule treatments in cystic fibrosis airway epithelial cells and patients
    Article Snippet: .. Tests are based on re-analysis of Affymetrix microarray mRNA data from nasal epithelial biopsies of CF patients, followed by comparisons with CF cell RNA-seq data ..

    Article Title: Clinical and genomic assessment of PD-L1 SP142 expression in triple-negative breast cancer
    Article Snippet: .. To begin to explore the biology and clinical associations of PD-L1 protein expression in TNBC, we collected a set of 149 tumors from which we created TMAs and performed DNA microarray-based gene expression profiling using Affymetrix microarrays. ..

    DNA Methylation Assay:

    Article Title: STATegra: Multi-omics data integration - A conceptual scheme and a bioinformatics pipeline
    Article Snippet: .. three data types were downloaded: array-based expression (mRNA) – Affymetrix Human Genome HT U133A, array-based expression (miRNA) – Agilent Microarray, and array-based DNA Methylation (DNAm) - Illumina Human Methylation 450K. ..

    Methylation:

    Article Title: STATegra: Multi-omics data integration - A conceptual scheme and a bioinformatics pipeline
    Article Snippet: .. three data types were downloaded: array-based expression (mRNA) – Affymetrix Human Genome HT U133A, array-based expression (miRNA) – Agilent Microarray, and array-based DNA Methylation (DNAm) - Illumina Human Methylation 450K. ..

    RNA Sequencing:

    Article Title: Gene therapy-emulating small molecule treatments in cystic fibrosis airway epithelial cells and patients
    Article Snippet: .. Tests are based on re-analysis of Affymetrix microarray mRNA data from nasal epithelial biopsies of CF patients, followed by comparisons with CF cell RNA-seq data ..

    Gene Expression:

    Article Title: Clinical and genomic assessment of PD-L1 SP142 expression in triple-negative breast cancer
    Article Snippet: .. To begin to explore the biology and clinical associations of PD-L1 protein expression in TNBC, we collected a set of 149 tumors from which we created TMAs and performed DNA microarray-based gene expression profiling using Affymetrix microarrays. ..

    Generated:

    Article Title: LncRNA MIR31HG fosters stemness malignant features of non-small cell lung cancer via H3K4me1- and H3K27Ace-mediated GLI2 expression
    Article Snippet: .. Kaplan–Meier curves were generated by the Kaplan–Meier Plotter database based on data of lung cancer mRNA gene chips (Affymetrix ID: 1554097_a_at). ..



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    Image Search Results


    Meta-data of genes shown in the cluster analysis of whose  mRNA  expression correlated with log 10 IC 50 -values of vitamin C in the NCI tumor cell line panel .

    Journal: Frontiers in Pharmacology

    Article Title: Pharmacogenomic Characterization and Isobologram Analysis of the Combination of Ascorbic Acid and Curcumin—Two Main Metabolites of Curcuma longa —in Cancer Cells

    doi: 10.3389/fphar.2017.00038

    Figure Lengend Snippet: Meta-data of genes shown in the cluster analysis of whose mRNA expression correlated with log 10 IC 50 -values of vitamin C in the NCI tumor cell line panel .

    Article Snippet: We correlated the IC 50 -values expressed on induction by curcumin and AA of 60 tumor cell lines by COMPARE analysis of microarray-based transcriptome-wide mRNA expression levels of these cell lines (Scherf et al., ).

    Techniques: Expressing, Virus, Transduction, Activity Assay, Binding Assay, Coagulation, Phospho-proteomics, Residue, Sequencing, Membrane, Activation Assay, Control, Ubiquitin Proteomics

    Dendrograms and cluster image map of curcumin obtained by hierarchical cluster analysis of mRNA expression of 40 genes in the NCI cell line panel as analyzed by the Novartis microarray platform . The dendrogram on the left shows the clustering of cell lines and the dendrogram on the top shows the clustering of genes. The cluster image map shows each single mRNA expression value obtained by microarray analysis. The expression values have been normalized and color-coded.

    Journal: Frontiers in Pharmacology

    Article Title: Pharmacogenomic Characterization and Isobologram Analysis of the Combination of Ascorbic Acid and Curcumin—Two Main Metabolites of Curcuma longa —in Cancer Cells

    doi: 10.3389/fphar.2017.00038

    Figure Lengend Snippet: Dendrograms and cluster image map of curcumin obtained by hierarchical cluster analysis of mRNA expression of 40 genes in the NCI cell line panel as analyzed by the Novartis microarray platform . The dendrogram on the left shows the clustering of cell lines and the dendrogram on the top shows the clustering of genes. The cluster image map shows each single mRNA expression value obtained by microarray analysis. The expression values have been normalized and color-coded.

    Article Snippet: We correlated the IC 50 -values expressed on induction by curcumin and AA of 60 tumor cell lines by COMPARE analysis of microarray-based transcriptome-wide mRNA expression levels of these cell lines (Scherf et al., ).

    Techniques: Expressing, Microarray

    Dendrograms and cluster image map of vitamin C obtained by hierarchical cluster analysis of mRNA expression of 40 genes in the NCI cell line panel as analyzed by the Novartis microarray platform . The dendrogram on the left shows the clustering of cell lines and the dendrogram on the top shows the clustering of genes. The cluster image map shows each single mRNA expression value obtained by microarray analysis. The expression values have been normalized and color-coded.

    Journal: Frontiers in Pharmacology

    Article Title: Pharmacogenomic Characterization and Isobologram Analysis of the Combination of Ascorbic Acid and Curcumin—Two Main Metabolites of Curcuma longa —in Cancer Cells

    doi: 10.3389/fphar.2017.00038

    Figure Lengend Snippet: Dendrograms and cluster image map of vitamin C obtained by hierarchical cluster analysis of mRNA expression of 40 genes in the NCI cell line panel as analyzed by the Novartis microarray platform . The dendrogram on the left shows the clustering of cell lines and the dendrogram on the top shows the clustering of genes. The cluster image map shows each single mRNA expression value obtained by microarray analysis. The expression values have been normalized and color-coded.

    Article Snippet: We correlated the IC 50 -values expressed on induction by curcumin and AA of 60 tumor cell lines by COMPARE analysis of microarray-based transcriptome-wide mRNA expression levels of these cell lines (Scherf et al., ).

    Techniques: Expressing, Microarray

    Rank correlations between  microarray-  and real-time quantitative PCR–based gene expression

    Journal: Proceedings of the National Academy of Sciences of the United States of America

    Article Title: Molecular transitions from papillomavirus infection to cervical precancer and cancer: Role of stromal estrogen receptor signaling

    doi: 10.1073/pnas.1509322112

    Figure Lengend Snippet: Rank correlations between microarray- and real-time quantitative PCR–based gene expression

    Article Snippet: An additional cryosection from each of 16 normal specimens, 13 CIN1/CIN2 specimens, 23 CIN3 specimens, and 16 cancer specimens was used to independently validate the Affymetrix microarray-based mRNA profiling data by RTQ-PCR.

    Techniques: Microarray

    Expression of genes encoding ribosomal proteins and mitochondrial electron transport chain complexes I, III, IV, and V is reduced at the transition from CIN3 to cancer. (A) Twenty-four small and 35 large ribosomal subunit proteins (∼70% of all ribosomal proteins) are expressed at statistically significant reduced levels in cancers compared with precancerous CIN3 lesions. Histograms show measurements in cancers by all 177 Affymetrix microarray probe sets for ribosomal protein-encoding genes, normalized to levels measured in CIN3s. (B) Green dots in the five complexes of the mitochondrial electron transport chain indicate proteins with reduced gene expression in cancers. Box plots (Tukey) show the average distribution of gene expression of all differentially expressed ETC complex I, III, IV, and V components (median levels are in red).

    Journal: Proceedings of the National Academy of Sciences of the United States of America

    Article Title: Molecular transitions from papillomavirus infection to cervical precancer and cancer: Role of stromal estrogen receptor signaling

    doi: 10.1073/pnas.1509322112

    Figure Lengend Snippet: Expression of genes encoding ribosomal proteins and mitochondrial electron transport chain complexes I, III, IV, and V is reduced at the transition from CIN3 to cancer. (A) Twenty-four small and 35 large ribosomal subunit proteins (∼70% of all ribosomal proteins) are expressed at statistically significant reduced levels in cancers compared with precancerous CIN3 lesions. Histograms show measurements in cancers by all 177 Affymetrix microarray probe sets for ribosomal protein-encoding genes, normalized to levels measured in CIN3s. (B) Green dots in the five complexes of the mitochondrial electron transport chain indicate proteins with reduced gene expression in cancers. Box plots (Tukey) show the average distribution of gene expression of all differentially expressed ETC complex I, III, IV, and V components (median levels are in red).

    Article Snippet: An additional cryosection from each of 16 normal specimens, 13 CIN1/CIN2 specimens, 23 CIN3 specimens, and 16 cancer specimens was used to independently validate the Affymetrix microarray-based mRNA profiling data by RTQ-PCR.

    Techniques: Expressing, Microarray

    Differential expression of estrogen-responsive genes correlates strongly with cervical cancer progression. (A) Hierarchical clustering of 128 specimens based on changes in gene expression measured by 365 Affymetrix probe sets measuring expression of 217 estrogen-responsive genes shows strong correlation with disease progression. (B) Box plots (Tukey) show the distribution of Affymetrix microarray-based gene expression measurements of CDKN2A (p16), ERα, and estrogen-responsive genes GREB1, PGR1, and AR. White and red horizontal lines indicate median expression levels.

    Journal: Proceedings of the National Academy of Sciences of the United States of America

    Article Title: Molecular transitions from papillomavirus infection to cervical precancer and cancer: Role of stromal estrogen receptor signaling

    doi: 10.1073/pnas.1509322112

    Figure Lengend Snippet: Differential expression of estrogen-responsive genes correlates strongly with cervical cancer progression. (A) Hierarchical clustering of 128 specimens based on changes in gene expression measured by 365 Affymetrix probe sets measuring expression of 217 estrogen-responsive genes shows strong correlation with disease progression. (B) Box plots (Tukey) show the distribution of Affymetrix microarray-based gene expression measurements of CDKN2A (p16), ERα, and estrogen-responsive genes GREB1, PGR1, and AR. White and red horizontal lines indicate median expression levels.

    Article Snippet: An additional cryosection from each of 16 normal specimens, 13 CIN1/CIN2 specimens, 23 CIN3 specimens, and 16 cancer specimens was used to independently validate the Affymetrix microarray-based mRNA profiling data by RTQ-PCR.

    Techniques: Expressing, Microarray